Common Gut Conditions and How They’re Usually Treated

Digestive symptoms are common, but often misunderstood. Many people are given a diagnosis or a management plan, but rarely the clarity on why their symptoms began.

The following outlines some of the most frequent gut issues, what they are, how they’re typically treated in conventional care, and what a more complete, functional approach can reveal about the body’s natural capacity to heal. It’s through this deeper exploration, and trust in the body, that we begin to understand and address the true origins of these symptoms.

  • Irritable Bowel Syndrome (IBS) IBS is one of the most common digestive diagnoses, and one of the most disheartening to receive. You may have spent months, or even years, navigating bloating, cramping, and unpredictable bowel habits, only to be told that everything “looks normal.” GPs and dietitians often view IBS as a lifelong condition to be managed rather than resolved. Appointments tend to focus on symptom control, prescribing laxatives, antispasmodics, or anti-diarrhoeal medication. Some people are referred to try the low-FODMAP diet or are advised to “reduce stress.” These strategies may bring short-term relief but often leave people feeling stuck, still searching for why their symptoms began. IBS is not simply a digestive issue, it’s a reflection of how the gut, nervous system, and immune function communicate. It may stem from post-infectious changes, microbial imbalance, food sensitivities, or prolonged stress that alters gut motility. True recovery begins when we slow down enough to understand these layers. By addressing microbiome health, supporting digestion, calming the gut-brain axis, and reintroducing foods with care, the body can begin to re-establish its natural rhythm.

  • SIBO occurs when bacteria that normally belong in the large intestine begin to overgrow in the small intestine. This overgrowth can lead to bloating, reflux, gas, abdominal pain, and irregular bowel movements that seem to fluctuate without clear reason.

    Conventional treatment often includes antibiotics or a short-term elimination diet. While this may bring temporary relief, relapse is common because the underlying causes, such as poor motility, low stomach acid, or stress, are rarely explored.

    A more complete approach looks beyond the bacteria itself to understand why they migrated in the first place. This may involve supporting stomach acid, improving motility, easing stress, and restoring microbial diversity once balance is regained. Healing SIBO is not about eradication, it’s about re-establishing flow and communication through the whole digestive system.

  • Many people assume reflux is caused by too much acid, yet for many, the problem begins with too little. Low stomach acid can slow digestion, allowing food to ferment and push upwards, creating the same burning sensations often mistaken for excess acid.

    Doctors often prescribe acid-suppressing medications (PPIs or antacids) to reduce discomfort. These can help in the short term but may worsen digestion and nutrient absorption if used long-term, leaving people dependent on them without addressing why reflux began.

    In functional nutrition, the focus shifts to restoring proper digestive function, eating calmly, chewing thoroughly, supporting stomach acid production where appropriate, and identifying foods or stressors that trigger symptoms. When digestion is supported from the top down, reflux often resolves naturally.

  • Candida is a naturally occurring yeast in the gut, but when balance is disrupted, through antibiotics, high sugar intake, stress, or low stomach acid, it can overgrow, leading to bloating, fatigue, brain fog, and recurrent infections.

    Conventional treatment may involve antifungal medication or short-term restrictive diets. These can help reduce symptoms but often overlook the deeper imbalances that allowed Candida to thrive in the first place.

    A more holistic approach focuses on restoring balance rather than simply removing yeast. This means supporting the immune system, liver, and detox pathways, replenishing beneficial bacteria, and using food as gentle antifungal medicine. Healing from Candida involves rebuilding resilience, not just removing overgrowth.

  • Histamine is part of the body’s natural defence and healing system, but when it builds up faster than it can be broken down, it can trigger headaches, flushing, anxiety, insomnia, hives, or digestive upset.

    GPs may focus on antihistamines or suggest avoiding high-histamine foods. While this can bring relief, it doesn’t address why histamine levels are elevated. Often, the issue lies in poor gut health, nutrient deficiencies, or reduced enzyme function that limits the body’s ability to clear histamine effectively.

    Working functionally means supporting both sides of the equation, reducing histamine load temporarily while improving the body’s own ability to process it. Nutrients like vitamin C, B6, copper, and magnesium can be key here, alongside improving gut integrity and microbial balance.

  • The gut lining is designed to be selectively permeable, allowing nutrients in while keeping unwanted particles out. When this barrier becomes compromised through stress, inflammation, infections, or poor diet, larger particles can pass into the bloodstream, triggering immune reactions, fatigue, and widespread inflammation.

    In conventional care, leaky gut isn’t formally recognised as a diagnosis. People may be treated for the resulting symptoms, skin issues, fatigue, or autoimmune flare-ups, rather than the integrity of the gut itself.

    From a functional perspective, intestinal permeability is a core piece of the puzzle. Supporting repair means identifying and calming triggers (such as infections, food sensitivities, or chronic stress), nourishing the gut lining with key nutrients like glutamine, zinc, and omega-3s, and rebuilding microbial diversity. When the lining heals, symptoms in seemingly unrelated areas of the body often begin to ease.

  • IBD involves chronic inflammation in the digestive tract, often accompanied by pain, urgency, fatigue, and nutrient deficiencies. Microscopic colitis shares similar inflammatory roots, though it can only be seen under a microscope.

    Doctors typically manage IBD with medication, steroids, immunosuppressants, or biologic, to control inflammation and prevent flares. While these can be life-changing in acute situations, they don’t address the underlying imbalances that contribute to inflammation in the first place.

    A more integrative approach supports medical care with nutrition and lifestyle foundations: calming inflammation through diet, correcting nutrient deficiencies (iron, B12, folate, vitamin D, zinc), gently restoring fibre tolerance, and supporting the gut lining during remission. Alongside this, regulating the nervous system and reducing emotional stress can profoundly influence flare patterns and recovery.

  • Bile acids and digestive enzymes play crucial roles in breaking down fats and absorbing nutrients. When bile flow becomes imbalanced, as can happen after gallbladder removal or chronic inflammation, or when the pancreas produces too few enzymes, digestion suffers. Symptoms often include oily stools, urgency, bloating, and fatigue from poor nutrient absorption.

    Conventionally, these conditions are treated with bile acid sequestrants or prescription digestive enzymes, which can offer relief but don’t address why these systems became sluggish or imbalanced.

    Functionally, we look upstream, supporting liver and gallbladder function, encouraging natural bile flow, and providing enzyme support where necessary. When digestion and absorption are restored, energy, skin health, and bowel regularity often follow.

  • The rhythm of bowel movements reflects how well the gut and nervous system are communicating. When that rhythm slows (constipation) or speeds up (diarrhoea), it can point to microbial imbalance, low fibre, dehydration, hormonal shifts, or stress-related motility issues.

    In conventional care, constipation is often treated with laxatives, and diarrhoea with anti-motility medication. While these can bring quick relief, they don’t explore the underlying cause of disrupted motility.

    In functional practice, the focus is on restoring rhythm, through hydration, gentle fibre balance, nervous system regulation, and microbial support. The gut moves best when it feels safe, nourished, and connected to the body’s natural cues.

  • Many people with gut issues also experience persistent fatigue. When digestion and absorption are impaired, the body struggles to make energy efficiently, leading to low mood, poor focus, and burnout.

    Medical approaches often focus on ruling out thyroid disease or anaemia, but when tests come back “normal,” people are left without answers.

    From a functional perspective, fatigue is often a sign of deeper imbalance, mitochondrial stress, inflammation, nutrient depletion (B-vitamins, CoQ10, magnesium), or poor gut absorption. Supporting energy involves rebuilding nourishment from the inside out, stabilising digestion, restoring nutrients, and calming the body’s stress response so energy can return naturally.

  • Dysbiosis simply means an imbalance in the gut microbiome, when helpful bacteria are diminished and less beneficial or opportunistic microbes begin to dominate. This imbalance can arise after antibiotic use, chronic stress, poor diet, or infections, and it often presents as bloating, irregular digestion, fatigue, low mood, and food sensitivities.

    Conventional care tends to focus on symptom management: antacids for reflux, fibre supplements for constipation, or probiotics suggested without testing. While these may offer short-term relief, they rarely address why balance was lost or how the ecosystem can be rebuilt sustainably.

    A more complete approach looks at the gut as an ecosystem that can be restored, not controlled. Through targeted testing, personalised nutrition, and gentle microbial support, we can reduce overgrowth, nourish beneficial species, and strengthen the gut lining. When balance returns, symptoms ease not because they’ve been suppressed, but because harmony has been restored.

  • Stomach acid plays a vital role in breaking down protein, absorbing nutrients, and keeping the upper digestive tract free from bacterial overgrowth. When acid levels are low, food can sit undigested, leading to bloating, belching, nausea, and even reflux-like symptoms. Many people are surprised to learn that too little acid can feel exactly like too much.

    Conventional treatment often assumes excess acid and relies on long-term use of acid-suppressing medication. These can provide comfort but may worsen nutrient absorption and microbial balance over time, leaving digestion sluggish and incomplete.

    A functional perspective looks at what led to low acid in the first place, stress, nutrient deficiency, infection, or prolonged medication use, and works to restore the body’s natural digestive function. Simple changes in meal habits, mindful eating, and specific nutrients can make a profound difference. When digestion begins effectively at the top, everything that follows flows more smoothly.